Submission readiness

Workshop/artifact

ready
Ready: clean source snapshot and Zenodo DOI are complete.

Preprint

ready
bioRxiv-ready as a bounded reproducibility benchmark.

Full journal

later
Better after Phase 1B adds multi-model scope or external biological review.

Current Publishable Claim

SimpleFold-3B was operationally viable on a 128 GB M3 Max under the direct local CLI route for one frozen 8-target set, with public cards, metrics, logs, environment metadata, checkpoint hashes, score recomputation, and explicit limitations.

Completed Gates

Title and abstract narrowed to SimpleFold-3B local inference.
Phase 1A frozen target set completed: 8/8 targets produced predictions and scores.
Selective repeat controls completed for 13CZ:A, 11BC:C, and 9K9Y:A.
Score recomputation validates 14 saved cards with zero lDDT/TM-score deltas versus stored scores.
LICENSE, CITATION.cff, .zenodo.json, and REPRODUCING.md added.
Clean release-snapshot path selected instead of exposing private pre-release git history.
Public GitHub source snapshot created at github.com/Theovia/eigen-reprod-atlas-phase1a/releases/tag/v0.1.2-phase1a.
Zenodo archive DOI created: 10.5281/zenodo.20275055.

Remaining External Gates

Optionally mirror the clean snapshot into an additional archive if a venue requires OSF in addition to Zenodo.
Obtain external biological review if target-level caveats should be strengthened beyond explicit limitation language.

Venue type	Status
Workshop / artifact / reproducibility track	Ready to submit.
bioRxiv	Ready to upload as a bounded reproducibility benchmark.
Bioinformatics or stronger computational biology journal	Defer until Phase 1B or external biological review.